Biocytin
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Biocytin

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Biocytin can be used as a versatile fluorescent marker for neuroanatomical investigations and for a biotinidase assay.

Category
L-Amino Acids
Catalog number
BAT-008028
CAS number
576-19-2
Molecular Formula
C16H28N4O4S
Molecular Weight
372.48
Biocytin
IUPAC Name
(2S)-6-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-2-aminohexanoic acid
Synonyms
N6-[5-[(3aS,4S,6aR)-Hexahydro-2-oxo-1H-thieno[3,4-d]imidazol-4-yl]-1-oxopentyl]-L-Lysine; Ne-Biotynyl-L-lysine
Appearance
White to off-white powder
Purity
≥ 95% (NMR)
Density
1.234 g/cm3
Melting Point
245ºC (dec.)
Boiling Point
748ºC at 760 mmHg
Storage
Store at 2-8°C
InChI
InChI=1S/C16H28N4O4S/c17-10(15(22)23)5-3-4-8-18-13(21)7-2-1-6-12-14-11(9-25-12)19-16(24)20-14/h10-12,14H,1-9,17H2,(H,18,21)(H,22,23)(H2,19,20,24)/t10-,11-,12-,14-/m0/s1
InChI Key
BAQMYDQNMFBZNA-MNXVOIDGSA-N
Canonical SMILES
C1C2C(C(S1)CCCCC(=O)NCCCCC(C(=O)O)N)NC(=O)N2
1.Diverse firing properties and Aβ-, Aδ-, and C-afferent inputs of small local circuit neurons in spinal lamina I.
Fernandes EC1, Luz LL, Mytakhir O, Lukoyanov NV, Szucs P, Safronov BV. Pain. 2016 Feb;157(2):475-87. doi: 10.1097/j.pain.0000000000000394.
Spinal lamina I is a key element of the pain processing system, which integrates primary afferent input and relays it to supraspinal areas. More than 90% of neurons in this layer are local circuit neurons, whose role in the signal processing is poorly understood. We performed whole-cell recordings in a spinal cord preparation with attached dorsal roots to examine morphological features and physiological properties of small local circuit neurons (n = 47) in lamina I. Cells successfully filled with biocytin (n = 17) had fusiform (n = 10), flattened (n = 4), and multipolar (n = 3) somatodendritic morphology; their axons branched extensively and terminated in laminae I-III. Intrinsic firing properties were diverse; in addition to standard tonic (n = 16), adapting (n = 7), and delayed (n = 6) patterns, small local circuit neurons also generated rhythmic discharges (n = 6) and plateau potentials (n = 10), the latter were suppressed by the L-type Ca-channel blocker nifedipine.
2.Targeted pruning of a neuron's dendritic tree via femtosecond laser dendrotomy.
Go MA1, Choy JM1, Colibaba AS1, Redman S1, Bachor HA2, Stricker C1,3, Daria VR1. Sci Rep. 2016 Jan 7;6:19078. doi: 10.1038/srep19078.
Neurons are classified according to action potential firing in response to current injection. While such firing patterns are shaped by the composition and distribution of ion channels, modelling studies suggest that the geometry of dendritic branches also influences temporal firing patterns. Verifying this link is crucial to understanding how neurons transform their inputs to output but has so far been technically challenging. Here, we investigate branching-dependent firing by pruning the dendritic tree of pyramidal neurons. We use a focused ultrafast laser to achieve highly localized and minimally invasive cutting of dendrites, thus keeping the rest of the dendritic tree intact and the neuron functional. We verify successful dendrotomy via two-photon uncaging of neurotransmitters before and after dendrotomy at sites around the cut region and via biocytin staining. Our results show that significantly altering the dendritic arborisation, such as by severing the apical trunk, enhances excitability in layer V cortical pyramidal neurons as predicted by simulations.
3.Fast neuronal labeling in live tissue using a biocytin conjugated fluorescent probe.
Harsløf M1, Müller FC1, Rohrberg J1, Rekling JC2. J Neurosci Methods. 2015 Sep 30;253:101-9. doi: 10.1016/j.jneumeth.2015.06.005. Epub 2015 Jun 12.
BACKGROUND: Biocytin has found numerous uses as a neuronal tracer, since it shows both antero- and retrograde transport in neuronal tracts. The main advantage of biocytin lies in the comprehensive intracellular distribution of the molecule, and in effective detection using avidin-based reactions. The main drawback is that biocytin cannot be visualized in live tissue.
4.Microconnectomics of the pretectum and ventral thalamus in the chicken (Gallus gallus).
Vega-Zuniga T1, Marín G2,3, González-Cabrera C2, Planitscher E1, Hartmann A1, Marks V1, Mpodozis J2, Luksch H1. J Comp Neurol. 2015 Dec 11. doi: 10.1002/cne.23941. [Epub ahead of print]
The avian pretectal and ventrothalamic nuclei, encompassing the griseum tectale (GT), lentiformis mesencephali (LM) and geniculatus lateralis pars ventralis (GLv), are prominent retinorecipient structures related to optic flow operations and visuomotor control. Hence, a close coordination of these neural circuits is to be expected. Yet the connectivity among these nuclei is known poorly. Here, using intracellular labeling and in situ hybridization, we investigated the detailed morphology, connectivity and neurochemical identity of neurons in these nuclei. Two different cell types exist in the GT: one that generates an axonal projection to optic tectum (TeO), LM, GLv, and n. intercalatus thalami (ICT), and a second population that only projects to the LM and GLv. In situ hybridization revealed that most neurons in the GT express the vesicular glutamate transporter (VGluT2) mRNA, indicating a glutamatergic identity. In the LM three morphological cell types were defined, two of which project axons towards dorsal targets.
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