Cycloviolacin O24
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Cycloviolacin O24

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Cycloviolacin O24 is produced by Viola odorata. It probably participates in a plant defense mechanism.

Category
Functional Peptides
Catalog number
BAT-012361
Molecular Formula
C126H179N35O42S6
Molecular Weight
3048.36
IUPAC Name
3-[(aS,1R,4S,13S,16R,19S,22S,28R,31S,34S,40S,46S,49S,52S,55R,58S,61S,67S,70S,76S,79R,82S,85R,91S,97S)-a,46-bis(2-amino-2-oxoethyl)-13-benzyl-76-(carboxymethyl)-4,19,31,52,82,97-hexakis[(1R)-1-hydroxyethyl]-49-(1H-imidazol-5-ylmethyl)-67-(1H-indol-3-ylmethyl)-40-(2-methylpropyl)-2a,3,6,9,12,15,18,21,24,27,30,33,39,42,45,48,51,54,57,60,66,69,75,78,81,84,87,90,96,99-triacontaoxo-58-propan-2-yl-4a,5a,8a,9a,12a,13a-hexathia-1a,2,5,8,11,14,17,20,23,26,29,32,38,41,44,47,50,53,56,59,65,68,74,77,80,83,86,89,95,98-triacontazaoctacyclo[53.47.4.416,79.428,85.034,38.061,65.070,74.091,95]tetradecahectan-22-yl]propanoic acid
Sequence
GLPTCGETCFGGTCNTPGCTCDPWPVCTHN
InChI
InChI=1S/C126H179N35O42S6/c1-55(2)34-73-123(200)159-31-19-27-85(159)116(193)156-100(61(9)166)122(199)146-76-48-204-205-49-77-111(188)154-99(60(8)165)121(198)150-80-52-208-206-50-78(149-120(197)98(59(7)164)153-105(182)68(28-29-93(175)176)137-89(171)45-134-104(76)181)108(185)140-69(35-63-20-12-11-13-21-63)102(179)132-43-88(170)131-44-92(174)151-96(57(5)162)118(195)148-79(109(186)142-72(39-87(128)169)107(184)157-101(62(10)167)126(203)161-33-16-24-82(161)113(190)135-47-91(173)139-77)51-207-209-53-81(112(189)155-97(58(6)163)119(196)143-70(37-65-42-129-54-136-65)106(183)141-71(38-86(127)168)103(180)133-46-90(172)138-73)147-117(194)95(56(3)4)152-115(192)84-26-18-32-160(84)124(201)74(36-64-41-130-67-23-15-14-22-66(64)67)145-114(191)83-25-17-30-158(83)125(202)75(40-94(177)178)144-110(80)187/h11-15,20-23,41-42,54-62,68-85,95-101,130,162-167H,16-19,24-40,43-53H2,1-10H3,(H2,127,168)(H2,128,169)(H,129,136)(H,131,170)(H,132,179)(H,133,180)(H,134,181)(H,135,190)(H,137,171)(H,138,172)(H,139,173)(H,140,185)(H,141,183)(H,142,186)(H,143,196)(H,144,187)(H,145,191)(H,146,199)(H,147,194)(H,148,195)(H,149,197)(H,150,198)(H,151,174)(H,152,192)(H,153,182)(H,154,188)(H,155,189)(H,156,193)(H,157,184)(H,175,176)(H,177,178)/t57-,58-,59-,60-,61-,62-,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79+,80+,81+,82+,83+,84+,85+,95+,96+,97+,98+,99+,100+,101+/m1/s1
InChI Key
HIVXAAAOZOLKNX-VPXBDZNXSA-N
Canonical SMILES
CC(C)CC1C(=O)N2CCCC2C(=O)NC(C(=O)NC3CSSCC4C(=O)NC(C(=O)NC5CSSCC(C(=O)NC(C(=O)NCC(=O)NCC(=O)NC(C(=O)NC(CSSCC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NCC(=O)N1)CC(=O)N)CC6=CN=CN6)C(C)O)NC(=O)C(NC(=O)C7CCCN7C(=O)C(NC(=O)C8CCCN8C(=O)C(NC5=O)CC(=O)O)CC9=CNC1=CC=CC=C19)C(C)C)C(=O)NC(C(=O)NC(C(=O)N1CCCC1C(=O)NCC(=O)N4)C(C)O)CC(=O)N)C(C)O)CC1=CC=CC=C1)NC(=O)C(NC(=O)C(NC(=O)CNC3=O)CCC(=O)O)C(C)O)C(C)O)C(C)O
1. Structural and biochemical characteristics of the cyclotide kalata B5 from Oldenlandia affinis
Manuel R Plan, K Johan Rosengren, Lillian Sando, Norelle L Daly, David J Craik Biopolymers. 2010;94(5):647-58. doi: 10.1002/bip.21409.
Cyclotides are a large family of plant-derived proteins typified by their head-to-tail cyclic backbone and knotted arrangement of three disulfide bonds. Although they display a diverse range of biological activities, their native function is thought to be plant defense. Here we characterized the expression, three-dimensional structure, and hemolytic activity of the cyclotide kalata B5 from the African plant Oldenlandia affinis. Kalata B5 shows an interesting seasonal variation in its expression and can only be isolated during certain times of the year, when the plant is flowering. It displays a typical tightly folded cyclic Scystine knot structure. A range of pH and temperature titrations reveal that a conserved glutamic acid in loop 1 Sof the structure forms a key hydrogen bond network, similar to that reported previously for other cyclotides. However, specific line broadening in the NMR spectra of kalata B5 suggests that the hydrogen bonding network in this peptide is less rigid than in other cyclotides. Notably, the pK9a) of Glu6 of 4.5 is higher than the values for other cyclotides studied so far, which range from 3.0 to 4.0, providing a further indication of a weaker hydrogen bond network. Kalata B5 has only moderate hemolytic activity compared with other highly expressed cyclotides, and this reduced activity probably reflects its more flexible structure. As is the case with other cyclotides, kalata B5 has an exposed hydrophobic region on its surface, supporting suggestions that this hydrophobic patch is a key feature for membrane binding and biological activity of cyclotides.
2. Anti-HIV cyclotides from the Chinese medicinal herb Viola yedoensis
Conan K L Wang, Michelle L Colgrave, Kirk R Gustafson, David C Ireland, Ulf Goransson, David J Craik J Nat Prod. 2008 Jan;71(1):47-52. doi: 10.1021/np070393g. Epub 2007 Dec 15.
Cyclotides are macrocyclic plant peptides characterized by a knotted arrangement of three disulfide bonds. They display a range of interesting bioactivities, including anti-HIV and insecticidal activities. More than 100 different cyclotides have been isolated from two phylogenetically distant plant families, the Rubiaceae and Violaceae. In this study we have characterized the cyclotides from Viola yedoensis, an important Chinese herb from the Violaceae family that has been reported to contain potential anti-HIV agents. From V. yedoensis five new and three known cyclotides were identified and shown to have anti-HIV activity. The most active of these is cycloviolacin Y5, which is one of the most potent of all cyclotides tested so far using in vitro XTT-based anti-HIV assays. Cycloviolacin Y5 is the most hydrophobic of the cyclotides from V. yedoensis. We show that there is a positive correlation between the hydrophobicity and the anti-HIV activity of the new cyclotides and that this trend tracks with their ability to disrupt membranes, as judged from hemolytic assays on human erythrocytes.
3. Discovery of a linear cyclotide from the bracelet subfamily and its disulfide mapping by top-down mass spectrometry
Giang Kien Truc Nguyen, Sen Zhang, Wei Wang, Clarence Tsun Ting Wong, Ngan Thi Kim Nguyen, James P Tam J Biol Chem. 2011 Dec 30;286(52):44833-44. doi: 10.1074/jbc.M111.290296. Epub 2011 Oct 6.
Cyclotides are heat-stable macrocyclic peptides from plants that display a wide range of biological activities. They can be divided into two subfamilies: Möbius or bracelet, based on the presence or absence of a cis-proline residue in loop 5, respectively. Currently, over 150 cyclotides have been discovered, but only four linear variants of the Möbius subfamily have been hitherto isolated. In this study, we report the discovery of two novel cyclotides, hedyotide B1 and hedyotide B2, from the aerial parts of Hedyotis biflora. Hedyotide B1 has a cyclic cystine knot structure typical of cyclotides. Interestingly, hedyotide B2 possesses a linear backbone and is the first linear representative of the bracelet subfamily. Disulfide mapping of hedyotide B2 by a top-down MS/MS approach showed that it shares the same knotted disulfide arrangement as conventional cyclotides. Its unfolding pathway also showed that the penetrating disulfide bond Cys III-VI is the most stable disulfide linkage. Cloning of the gene encoding hedyotide B2 revealed a nonsense mutation that introduces a premature stop codon at the conserved Asn residue position, which is essential for an end-to-end backbone ligation. Biophysical characterization showed that hedyotide B2 was more susceptible to exopeptidase degradation as compared with hedyotide B1. Hedyotide B2 was also inactive against all four tested bacterial strains, whereas hedyotide B1 was bactericidal to Escherichia coli and Streptococcus salivarius at low micromolar concentration. Our results provide a deeper understanding of the structures, functions, and biosynthetic processing of cyclotides and uncyclotides in plants.
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