Fmoc-L-aspartic acid α-4-nitroanilide
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Fmoc-L-aspartic acid α-4-nitroanilide

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Useful for the solid phase synthesis of peptides-4-nitroanilides on 2-chlorotrityl resins.

Category
Fmoc-Amino Acids
Catalog number
BAT-003736
CAS number
185547-52-8
Molecular Formula
C25H21N3O7
Molecular Weight
475.46
Fmoc-L-aspartic acid α-4-nitroanilide
IUPAC Name
(3S)-3-(9H-fluoren-9-ylmethoxycarbonylamino)-4-(4-nitroanilino)-4-oxobutanoic acid
Synonyms
Fmoc-L-Asp-pNA; (3S)-3-(9H-fluoren-9-ylmethoxycarbonylamino)-4-(4-nitroanilino)-4-oxobutanoic acid
Appearance
Off-white powder
Purity
≥ 98% (HPLC)
Storage
Store at 2-8 °C
InChI
InChI=1S/C25H21N3O7/c29-23(30)13-22(24(31)26-15-9-11-16(12-10-15)28(33)34)27-25(32)35-14-21-19-7-3-1-5-17(19)18-6-2-4-8-20(18)21/h1-12,21-22H,13-14H2,(H,26,31)(H,27,32)(H,29,30)/t22-/m0/s1
InChI Key
WIGASSLCYMGNEA-QFIPXVFZSA-N
Canonical SMILES
C1=CC=C2C(=C1)C(C3=CC=CC=C32)COC(=O)NC(CC(=O)O)C(=O)NC4=CC=C(C=C4)[N+](=O)[O-]

Fmoc-L-aspartic acid α-4-nitroanilide, a versatile compound widely utilized in peptide synthesis and biochemical research, boasts a myriad of applications in scientific endeavors. Here are four key applications, presented with high perplexity and burstiness:

Peptide Synthesis: Serving as a fundamental building block in solid-phase peptide synthesis (SPPS), Fmoc-L-aspartic acid α-4-nitroanilide facilitates the sequential addition of amino acids without triggering unwanted side reactions. This enables researchers to craft high-purity peptides suitable for exploring various realms, from investigating protein-protein interactions to delving into enzyme activities and therapeutic roles.

Enzyme Substrate: A pivotal player in enzymatic assays, this compound acts as a compelling substrate for assessing protease activities. The nitroanilide group, acting as a chromogenic moiety, lends itself to colorimetric or spectrophotometric analyses of enzymatic reactions, crucial for evaluating potential inhibitors or activators of specific proteases and fostering advancements in drug discovery endeavors.

Structural Analysis: Embracing Fmoc-L-aspartic acid α-4-nitroanilide in peptide chains allows for an in-depth exploration of synthesized peptides’ secondary and tertiary structures. Leveraging its distinctive properties, researchers can unravel conformational changes through spectroscopic methods such as NMR and circular dichroism, shedding light on the structural intricacies of peptide interactions and stability, driving forward structural biology investigations.

Biomedical Research: A linchpin in biomedical research, Fmoc-L-aspartic acid α-4-nitroanilide emerges as a key reagent for unraveling the mysteries of apoptosis and other cellular demise pathways. Scientists harness its potential to craft specific peptide sequences capable of either inducing or inhibiting apoptotic pathways within cell culture models, thereby fueling the development of novel therapeutic strategies for diseases characterized by dysregulated cell death processes, like cancer.

1. Cloning and characterization of the novel d-aspartyl endopeptidase, paenidase, from Paenibacillus sp. B38
Satoru Nirasawa, Kazuhiko Nakahara, Saori Takahashi J Biochem. 2018 Aug 1;164(2):103-112. doi: 10.1093/jb/mvy033.
Paenidase is the first micro-organism-derived d-aspartyl endopeptidase that specifically recognizes an internal d-Asp residue to cleave [d-Asp]-X peptide bonds. Using peptide sequences obtained from the protein, we performed PCR with degenerate primers to amplify the paenidase I-encoding gene. Nucleotide sequencing revealed that mature paenidase I consist of 322 amino acid residues and that the protein is encoded as a pro-protein with a 197-amino-acid N-terminal extension compared to the mature protein. Paenidase I exhibits amino acid sequence similarity to several penicillin-binding proteins. In addition, paenidase I was classified into peptidase family S12 based on a MEROPS database search. Family S12 contains serine-type d-Ala-d-Ala carboxypeptidases that have three active site residues (Ser, Lys and Tyr) in the conserved motifs Ser-Xaa-Thr-Lys and Tyr-Xaa-Asn. These motifs were conserved in the primary structure of paenidase I, and the role of these residues was confirmed by site-directed mutagenesis.
2. Substrate stereoselectivity of mammalian D-aspartyl endopeptidase
Tadatoshi Kinouchi, Norihiko Fujii, Noriko Fujii J Chromatogr B Analyt Technol Biomed Life Sci. 2011 Nov 1;879(29):3349-52. doi: 10.1016/j.jchromb.2011.08.031. Epub 2011 Aug 30.
The formation and accumulation of D-aspartate residue (D-Asp) in proteins caused by oxidative stress leads to dysfunction and/or denaturation of proteins, and is consequently responsible for aging-related misfolding diseases such as cataracts, prion disease, and Alzheimer's disease. We sought to identify that an unknown protease selectively degrades the noxious D-Asp-containing protein, namely D-aspartyl endopeptidase (DAEP), and finally purified it from the inner mitochondrial membrane of mouse liver. In order to analyze the substrate stereoselectivity of DAEP, we synthesized a peptide corresponding to 55-65 (Thr-Val-Leu-Asp-Ser-Gly-Ile-Ser-Glu-Val-Arg) of human αA-crystallin and its corresponding diastereoisomers in which L-α-Asp was replaced with L-β-, D-α- or D-β-Asp residue at position 58. Following incubation of that peptide with purified DAEP, it was only degraded at D-α-Asp(58), independent of ATP or NAD. This result indicates that DAEP stereoselectively recognizes and degrades its substrate at the internal D-α-Asp residue. DAEP therefore seems to physiologically serve as the quality control system against the noxious D-Asp-containing protein in the long life span of mammals.
3. Isolation and characterization of mammalian D-aspartyl endopeptidase
T Kinouchi, H Nishio, Y Nishiuchi, M Tsunemi, K Takada, T Hamamoto, Y Kagawa, N Fujii Amino Acids. 2007 Jan;32(1):79-85. doi: 10.1007/s00726-006-0348-4. Epub 2006 Oct 6.
The accumulation of D-isomers of aspartic acid (D-Asp) in proteins during aging has been implicated in the pathogenesis of Alzheimer's disease (AD), cataracts and arteriosclerosis. Here, we identified a specific lactacystin-sensitive endopeptidase that cleaves the D-Asp-containing protein and named it D-aspartyl endopeptidase (DAEP). DAEP has a multi-complex structure (MW: 600 kDa) and is localized in the inner mitochondrial membrane. However, DAEP activity was not detected in E. coli, S. cerevisiae, and C. elegans. A specific inhibitor for DAEP, i-DAEP: (benzoyl-L-Arg-L-His-[D-Asp]-CH(2)Cl; MW: 563.01), was newly synthesized and inhibited DAEP activity (IC(50), 3 microM), a factor of ten greater than lactacystin on DAEP. On the other hand, i-DAEP did not inhibit either the 20S or 26S proteasome. And we identified succinate dehydrogenase and glutamate dehydrogenase 1 as components of DAEP by affinity label using biotinylated i-DAEP. In the long life span of mammals, DAEP may serve as a scavenger against accumulation of racemized proteins in aging. Insights into DAEP will provide the foundation for developing treatments of diseases, such as AD, in which accumulation of D-Asp-containing proteins are implicated.
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