N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine
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N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine

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Category
Fmoc-Amino Acids
Catalog number
BAT-005479
CAS number
1007840-62-1
Molecular Formula
C38H33NO4S
Molecular Weight
599.74
N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine
IUPAC Name
(2R)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-4-tritylsulfanylbutanoic acid
Synonyms
Fmoc-D-homoCys(Trt)-OH; Fmoc-D-Hcy(Trt)-OH; (R)-2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)-4-(tritylthio)butanoic acid; Fmoc-S-trityl-D-homocysteine
Appearance
White to off-white powder
Purity
≥ 97% (HPLC)
Density
1.256±0.060 g/cm3
Boiling Point
780.1±60.0 °C
Storage
Store at 2-8 °C
InChI
InChI=1S/C38H33NO4S/c40-36(41)35(39-37(42)43-26-34-32-22-12-10-20-30(32)31-21-11-13-23-33(31)34)24-25-44-38(27-14-4-1-5-15-27,28-16-6-2-7-17-28)29-18-8-3-9-19-29/h1-23,34-35H,24-26H2,(H,39,42)(H,40,41)/t35-/m1/s1
InChI Key
FKBGJLDYRSFHBT-PGUFJCEWSA-N
Canonical SMILES
C1=CC=C(C=C1)C(C2=CC=CC=C2)(C3=CC=CC=C3)SCCC(C(=O)O)NC(=O)OCC4C5=CC=CC=C5C6=CC=CC=C46

N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine is a derivative of the amino acid homocysteine, chemically modified to introduce two distinct protective groups: fluorenylmethoxycarbonyl (Fmoc) and trityl (Trt). The Fmoc group is widely used in peptide synthesis as a temporary protective group for the amino group, allowing for selective removal under mild basic conditions, usually using piperidine. The trityl group serves as a protective mechanism for the thiol group of homocysteine, stabilizing it throughout various chemical reactions. This dual protection is particularly useful in multi-step organic synthesis, in which various chemical environments might otherwise interfere destructively with reactive sites. N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine’s design makes it an integral component in the fields of peptide synthesis where precise control over reactivity is essential.

The first major application of N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine is in solid-phase peptide synthesis (SPPS). In SPPS, the protection of functional groups on amino acids is crucial to avoid undesirable side reactions. The Fmoc group allows for iterative peptide chain elongation, whereby it’s sequentially removed to expose the reactive amine for reaction with the next amino acid. Concurrently, the trityl group safeguards the thiol from oxidation or inadvertent cleavage under conditions used to remove the Fmoc group, thus providing a controlled environment for the synthesis of thiol-containing peptides. This method significantly contributes to the swift and efficient generation of peptides for research and pharmaceutical applications.

A second application is in the synthesis of modified peptides and proteins for biochemical studies. N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine allows researchers to introduce sulfhydryl groups into peptides, enabling the study of redox processes, protein folding, and structure due to the reactivity of the thiol group. Such modifications are crucial in the exploration of disulfide bridges which play critical roles in the structural stability and function of many proteins. By finely tuning these modifications, scientists can investigate the fundamental biological processes underpinning cellular function and disease.

The third significant application realm is in the development of enzyme inhibitors and therapeutic agents. Researchers use N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine as a starting point in designing molecules that can modulate enzyme activity by targeting thiol groups critical for enzymatic function. This approach has propelled the development of inhibitors that serve as therapeutic agents for conditions like cancer, where targeting specific enzymes can impede cancer cell growth or survival. The bespoke arrangement of protective groups enables detailed customization of molecular targets, significantly enhancing the efficacy and selectivity of such structural designs.

Lastly, N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine finds utility in materials science, particularly in creating peptide-based biomaterials. The strategic protection allowed by the Fmoc and trityl groups enables the synthesis of peptide sequences that can polymerize or form gels. These materials exhibit biocompatibility, making them suitable for applications in tissue engineering and regenerative medicine. Tailoring the peptide structure through components like N-α-(9-Fluorenylmethoxycarbonyl)-S-trityl-D-homocysteine permits fine adjustments to the physical and chemical properties of the resulting biomaterial, facilitating innovations in creating scaffolding and delivering therapeutic agents within biological systems.

1.Click chemistry aided synthesis of 1,4-substituted 1,2,3-triazole based N-Fmoc protected epsilon-amino acids: isolation, characterization and synthesis of novel triazole based unnatural amino acids.
Sureshbabu VV1, Narendra N, Hemantha HP, Chennakrishnareddy G. Protein Pept Lett. 2010 Apr;17(4):499-506.
A new class of 1,4-substituted 1,2,3-triazole-based unnatural amino acids is demonstrated by employing click reaction between N-Fmoc amino alkyl azides and propiolic acid. The resulting unnatural amino acids were isolated and then subjected to Fmoc deprotection to isolate 1,2,3-triazole based amino acids as stable solids. These new class of molecules were also used for chain extension from both N- and C-terminals to synthesize dipeptidomimetics bearing 1,2,3-triazole moiety in the backbone.
2.Solid-phase synthesis of O-glycosylated Nalpha-Fmoc amino acids and analysis by high-resolution magic angle spinning NMR.
Yao NH1, He WY, Lam KS, Liu G. J Comb Chem. 2004 Mar-Apr;6(2):214-9.
Direct O-glycosylation of amino acids bound to TentaGel resin with a number of glycosyl trichloroacetimidate donors results in high yields. The glycosylation reaction can be easily monitored by analyzing the bead-bound amino acids with high-resolution magic angle spinning (HR-MAS) NMR. These studies pave a new way for the construction of "one-bead one-compound" O-glycopeptide libraries with standard amino acid building blocks and appropriate glycosyl trichloroacetimidate donors.
3.Isocyanates of N alpha-[(9-fluorenylmethyl)oxy]carbonyl amino acids: synthesis, isolation, characterization, and application to the efficient synthesis of urea peptidomimetics.
Patil BS1, Vasanthakumar GR, Suresh Babu VV. J Org Chem. 2003 Sep 19;68(19):7274-80.
The Curtius rearrangement of Fmoc-amino acid azides 1 was carried out in toluene by refluxing the solution for 30 min. The resulting isocyanates 2 have been isolated as crystalline solids and are fully characterized by IR, (1)H NMR, (13)C NMR, and mass spectra. They are found to be stable for several months when stored at 4 degrees C. The acyl azides of Asp, Glu, Ser, Tyr, and Lys with side-chain protection having tert-butyl, benzyl, and Boc groups were also converted to the corresponding isocyanates 2h-m. The rearrangement of Fmoc-amino acid azides in toluene to isocyanates 2 under microwave irradiation was also accomplished. The direct exposure of solid azides to microwaves for 60 s led to the completion of the rearrangement. The resulting isocyanates, after recrystallization, were found to be analytically pure. The scale-up of the rearrangement, under microwave irradiation as tested up to 0.75 mol, posed no problems and led to the isolation of the isocyanates in 91-96% yield.
4.Determination of proline in wine using flow injection analysis with tris(2,2'-bipyridyl)ruthenium(II) chemiluminescence detection.
Costin JW1, Barnett NW, Lewis SW. Talanta. 2004 Nov 15;64(4):894-8. doi: 10.1016/j.talanta.2004.03.065.
Flow injection methodology is described for the determination of proline in red and white wines using tris(2,2'-bipyridyl)ruthenium(II) chemiluminescence detection. Selective conditions were achieved for proline at pH 10, while other amino acids and wine components did not interfere. The precision of the method was less than 1.00% (R.S.D.) for five replicates of a standard (4 x 10(-6)M) and the detection limit was 1 x 10(-8)M. The level of proline in white and sparkling wines using the developed methodology was equivalent to those achieved using HPLC-FMOC amino acid analysis. SPE removal of phenolic material was required for red wines to minimize Ru(bipy)(3)(3+) consumption and its associated effect on accuracy.
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