Orotic acid hydrate
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Orotic acid hydrate

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Category
Cyclic Amino Acids
Catalog number
BAT-001498
CAS number
50887-69-9
Molecular Formula
C5H6N2O5
Molecular Weight
174.12
Orotic acid hydrate
IUPAC Name
2,4-dioxo-1H-pyrimidine-6-carboxylic acid;hydrate
Synonyms
H-Oro-OH H2O; 1,2,3,6-Tetrahydro-2,6-dioxo-4-pyrimidinecarboxylic acid hydrate
Purity
97%
Density
1.642 g/cm3
Melting Point
>300°C(lit.)
Boiling Point
656.9ºC at 760 mmHg
InChI
InChI=1S/C5H4N2O4.H2O/c8-3-1-2(4(9)10)6-5(11)7-3;/h1H,(H,9,10)(H2,6,7,8,11);1H2
InChI Key
YXUZGLGRBBHYFZ-UHFFFAOYSA-N
Canonical SMILES
C1=C(NC(=O)NC1=O)C(=O)O.O
1. Structural Properties, Order-Disorder Phenomena, and Phase Stability of Orotic Acid Crystal Forms
Doris E Braun, Karol P Nartowski, Yaroslav Z Khimyak, Kenneth R Morris, Stephen R Byrn, Ulrich J Griesser Mol Pharm. 2016 Mar 7;13(3):1012-29. doi: 10.1021/acs.molpharmaceut.5b00856. Epub 2016 Jan 25.
Orotic acid (OTA) is reported to exist in the anhydrous (AH), monohydrate (Hy1), and dimethyl sulfoxide monosolvate (SDMSO) forms. In this study we investigate the (de)hydration/desolvation behavior, aiming at an understanding of the elusive structural features of anhydrous OTA by a combination of experimental and computational techniques, namely, thermal analytical methods, gravimetric moisture (de)sorption studies, water activity measurements, X-ray powder diffraction, spectroscopy (vibrational, solid-state NMR), crystal energy landscape, and chemical shift calculations. The Hy1 is a highly stable hydrate, which dissociates above 135 °C and loses only a small part of the water when stored over desiccants (25 °C) for more than one year. In Hy1, orotic acid and water molecules are linked by strong hydrogen bonds in nearly perfectly planar arranged stacked layers. The layers are spaced by 3.1 Å and not linked via hydrogen bonds. Upon dehydration the X-ray powder diffraction and solid-state NMR peaks become broader, indicating some disorder in the anhydrous form. The Hy1 stacking reflection (122) is maintained, suggesting that the OTA molecules are still arranged in stacked layers in the dehydration product. Desolvation of SDMSO, a nonlayer structure, results in the same AH phase as observed upon dehydrating Hy1. Depending on the desolvation conditions, different levels of order-disorder of layers present in anhydrous OTA are observed, which is also suggested by the computed low energy crystal structures. These structures provide models for stacking faults as intergrowth of different layers is possible. The variability in anhydrate crystals is of practical concern as it affects the moisture dependent stability of AH with respect to hydration.
2. Orotic acid in water solution, a DFT and (13)C NMR spectroscopic study
Dominika Kubica, Adam Gryff-Keller J Phys Chem B. 2015 May 7;119(18):5832-8. doi: 10.1021/acs.jpcb.5b02410. Epub 2015 Apr 28.
Orotic acid, a biologically important compound, can exist in aqueous solutions in several ionic and tautomeric forms. Interpretation of the experimental (13)C NMR chemical shifts of this compound based on the results of energy and magnetic shielding calculations performed by DFT B3LYP/6-311++G(2d,p)/PCM method has shown that in water solutions the diketo tautomers are the dominant structural forms of this acid and its anions. For neutral molecules the anti conformation is preferable, monoanion occurs as the conventional carboxylate anion, whereas the orotic dianion exists in two tautomeric forms in the proportion of ca. 4:1. It has been found that the experimental (13)C NMR chemical shifts can be reproduced well by the results of DFT calculations, although for the orotate monoanion some small but characteristic divergences can be noticed. Similar divergences have been also observed for a few other aromatic carboxylates. It seems that the specific solute-solvent interactions occurring in our systems can be the cause of this inconsistency. To support this hypothesis, a simple and effective method of including the specific hydration into the theoretical calculations has been proposed.
3. Highly Water-Soluble Orotic Acid Nanocrystals Produced by High-Energy Milling
Jéssica de Cássia Zaghi Compri, et al. J Pharm Sci. 2019 May;108(5):1848-1856. doi: 10.1016/j.xphs.2018.12.015. Epub 2018 Dec 30.
Orotic acid (OA), a heterocyclic compound also known as vitamin B13, has shown potent antimalarial and cardiac protection activities; however, its limited water solubility has posed a barrier to its use in therapeutic approaches. Aiming to overcome this drawback, OA freeze-dried nanocrystal formulations (FA, FB, and FC) were developed by using the high-energy milling method. Polysorbate 80 (FA) and povacoat® (FC) were used alone and combined (FB) as stabilizers. Nanocrystals were fully characterized by dynamic light scattering, laser diffraction, transmission electron microscopy, thermal analysis (thermogravimetry and derivative thermogravimetry, and differential scanning calorimetry), and X-ray powder diffraction revealing an acceptable polydispersity index, changes in the crystalline state with hydrate formation and z-average of 100-200 nm, a remarkable 200-time reduction compared to the OA raw material (44.3 μm). Furthermore, saturation solubility study showed an improvement of 13 times higher than the micronized powder. In addition, cytotoxicity assay revealed mild toxicity for the FB and FC formulations prepared with povacoat®. OA nanocrystal platform can deliver innovative products allowing untapped the versatile potential of this drug substance candidate.
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