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RTD-2

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RTD-2 is an antibacterial peptide isolated from Macaca mulatta. It has activity against gram-positive bacteria, gram-negative bacteria, Antiviral and fungi.

Category
Functional Peptides
Catalog number
BAT-011086
Molecular Formula
C80H142N36O18S6
Molecular Weight
2088.6
IUPAC Name
1-[3-[(1R,4S,7R,10S,16S,19S,22R,25S,28R,31S,34R,37S,43R,46S,49R,52S)-25-[(2S)-butan-2-yl]-4,16,31,43,46-pentakis(3-carbamimidamidopropyl)-52-(2-methylpropyl)-3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54-octadecaoxo-10,37-di(propan-2-yl)-56,57,60,61,64,65-hexathia-2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53-octadecazatetracyclo[26.26.4.47,22.434,49]hexahexacontan-19-yl]propyl]guanidine
Synonyms
Cyclic-(GVCRCLCRRGVCRCICRR); Rhesus theta-defensin 2; Gly-Val-Cys-Arg-Cys-Leu-Cys-Arg-Arg-Gly-Val-Cys-Arg-Cys-Leu-Cys-Arg-Arg
Sequence
(cyclo)-GVC(1)RC(2)LC(3)RRGVC(3)RC(2)LC(1)RR-(cyclo)
InChI
InChI=1S/C80H142N36O18S6/c1-9-40(8)58-74(134)113-52-35-139-138-34-51(112-73(133)57(39(6)7)115-55(118)30-100-60(120)42(17-11-23-94-76(83)84)102-62(122)44(104-69(52)129)19-13-25-96-78(87)88)67(127)105-45(20-14-26-97-79(89)90)63(123)108-49-32-136-140-36-53(71(131)116-58)109-64(124)46(21-15-27-98-80(91)92)106-68(128)50-33-137-135-31-48(110-65(125)47(28-37(2)3)107-70(49)130)66(126)103-43(18-12-24-95-77(85)86)61(121)101-41(16-10-22-93-75(81)82)59(119)99-29-54(117)114-56(38(4)5)72(132)111-50/h37-53,56-58H,9-36H2,1-8H3,(H,99,119)(H,100,120)(H,101,121)(H,102,122)(H,103,126)(H,104,129)(H,105,127)(H,106,128)(H,107,130)(H,108,123)(H,109,124)(H,110,125)(H,111,132)(H,112,133)(H,113,134)(H,114,117)(H,115,118)(H,116,131)(H4,81,82,93)(H4,83,84,94)(H4,85,86,95)(H4,87,88,96)(H4,89,90,97)(H4,91,92,98)/t40-,41+,42-,43-,44-,45-,46-,47-,48-,49-,50-,51-,52-,53-,56-,57-,58-/m0/s1
InChI Key
ADWJKLSRYGGKHB-CATILVRHSA-N
Canonical SMILES
CCC(C)C1C(=O)NC2CSSCC(C(=O)NC(C(=O)NC3CSSCC(C(=O)N1)NC(=O)C(NC(=O)C4CSSCC(C(=O)NC(C(=O)NC(C(=O)NCC(=O)NC(C(=O)N4)C(C)C)CCCNC(=N)N)CCCNC(=N)N)NC(=O)C(NC3=O)CC(C)C)CCCNC(=N)N)CCCNC(=N)N)NC(=O)C(NC(=O)CNC(=O)C(NC(=O)C(NC2=O)CCCNC(=N)N)CCCNC(=N)N)C(C)C
1. Homodimeric theta-defensins from rhesus macaque leukocytes: isolation, synthesis, antimicrobial activities, and bacterial binding properties of the cyclic peptides
Dat Tran, Patti A Tran, Yi-Quan Tang, Jun Yuan, Tim Cole, Michael E Selsted J Biol Chem. 2002 Feb 1;277(5):3079-84. doi: 10.1074/jbc.M109117200. Epub 2001 Oct 23.
Rhesus theta-defensin 1 (RTD-1) is a unique tridisulfide, cyclic antimicrobial peptide formed by the ligation of two 9-residue sequences derived from heterodimeric splicing of similar 76-amino acid, alpha-defensin-related precursors, termed RTD1a and RTD1b (Tang, Y. Q., Yuan, J., Osapay, G., Osapay, K., Tran, D., Miller, C. J., Ouellette, A. J., and Selsted, M. E. (1999) Science 286, 498-502). The structures of RTD-2 and RTD-3 were predicted to exist if homodimeric splicing of the RTD1a and RTD1b occurs in vivo. Western blotting disclosed the presence of putative theta-defensins, distinct from RTD-1, in leukocyte extracts. Two new theta-defensins, RTD-2 and RTD-3, were purified by reverse-phase high performance liquid chromatography and characterized by amino acid analysis, matrix-assisted laser desorption/ionization time-of-flight mass spectroscopy, and comparison to the synthetic standards. RTD-2 and RTD-3 are the predicted homodimeric splicing products of RTD1b and RTD1a, respectively. The cellular abundances of RTD-1, -2, and -3 were 29:1:2, indicating that there is a preference for the heterodimeric ligation that generates RTD-1. RTD-1, -2, and -3 had similar antimicrobial activities against Staphylococcus aureus, Candida albicans, and Cryptococcus neoformans, whereas the activity of RTD-2 against Escherichia coli was 2-3-fold less than those of RTD-1 and RTD-3. Equal amounts of each theta-defensin bound to E. coli cells, indicating that the differences in antibacterial activities are the result of post-binding processes.
2. Theta-defensins: cyclic antimicrobial peptides produced by binary ligation of truncated alpha-defensins
Michael E Selsted Curr Protein Pept Sci. 2004 Oct;5(5):365-71. doi: 10.2174/1389203043379459.
The first cyclic peptide discovered in animals is an antimicrobial octadecapeptide that is expressed in leukocytes of rhesus monkeys. The peptide, termed rhesus Theta-defensin 1 (RTD-1) is the prototype of a new family of antimicrobial peptides, which like the previously characterized alpha- and beta-defensin families, possesses broad spectrum microbicidal activities against bacteria, fungi, and protects mononuclear cells from infection by HIV-1. The cyclic Theta-defensin structure is essential for a number of its antimicrobial properties, as demonstrated by the markedly reduced microbicidal activities of de-cyclized Theta-defensin analogs. Genetic and biochemical experiments disclosed that the biosynthesis of RTD-1 results from the head-to-tail joining of two nine-amino acid peptides, each of which is donated by a separate precursor polypeptide, which are in fact C-terminally truncated pro-alpha-defensins. Alternate combinations of the two nonapeptides generate two additional macaque Theta-defensins, RTD-2 and RTD-3. Humans do not express Theta-defensin peptides, but mRNAs encoding at least two Theta-defensins are expressed in human bone marrow. However, in each case the open reading frame is interrupted by a stop codon in the signal peptide-coding region. The mature Theta-defensin peptide is a two-stranded beta-sheet that, like the alpha- and beta-defensins, is stabilized by three disulfides. However, the parallel orientation of the Theta-defensin disulfide arrangement allows for substantial flexibility around its short axis. Unlike alpha- and beta-defensins, RTD-1 lacks an amphiphilic topology. This may partially explain the unusual interaction between Theta-defensins and phospholipid bilayers.
3. Simplified Theta-defensin [Ser3,7,12,16] RTD-2 Analog Is Involved in Proteasomal Degradation Pathway in Breast Cancer
Joanna Pianka, Natalia Gruba, Kamila Kitowska, Kamil Mieczkowski, Magdalena Wysocka, Rafał Sądej, Adam Lesner Anticancer Res. 2021 Nov;41(11):5415-5423. doi: 10.21873/anticanres.15353.
Background/aim: Antimicrobial peptides are part of the innate immune response, regulate inflammation and initiate acquired immunity. This study focused on theta-defensins that have been shown to have anticancer properties. Materials and methods: RTD-2 analogs were synthesized on a peptide synthesizer. Cell viability was estimated using the MTT test. Immunoprecipitation assay was conducted to determine the molecular partner of the [Ser3,7,12,16]-RTD-2 analog. Results: Here, we present the biologically active [Ser3,7,12,16]-RTD-2 analog that selectively targets various types of breast cancer cells. Immunoprecipitation protein-protein interaction studies showed eleven proteins common to MDA-MB-231 and T47D cell lines. Taking into account their cellular location, it can be concluded that the synthesized peptide interacts mainly with nuclear proteins, which correlates with the obtained microscopic image. Conclusion: Proteins that interact strongly with the [Ser3,7,12,16]-RTD-2 analog are closely related to the proteasomal protein degradation pathway. As the activity of the ubiquitin-proteasome system is markedly increased in patients with breast cancer, it is likely that selective modulation of this system may be a useful method for breast cancer treatment.
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